Chapter 1: Systems Biology of Genome Structure and Dynamics.- Chapter 2: A Systems Perspective of Complex Diseases: from Reductionism to Integration.- Chapter 3: Systems Biology of Bacterial Immune Systems: Regulation of Restriction-Modification and CRISPR-Cas Systems.- Chapter 4: Systems Biology of RNA Binding Proteins in Amyotrophic Lateral Sclerosis.- Chapter 5: Systems Approaches to Map in vivo RNA-Protein Interactions in Arabidopsis thaliana.- Chapter 6: Systems-Level Analysis of Bacterial Regulatory Small RNA Networks.- Chapter 7: Epioncogenes in Cancer-Identification of Transcriptomic and Epigenomic Cooperation Networks by Multi-Omics Integration of RNA-Seq and ChIP-Seqdata.- Chapter 8: Coupling Large Scale -Omics Data for Deciphering Systems Complexity.- Chapter 9: Deciphering the Universe of RNA Structures and tTans RNA-RNA Interactions of Transcriptomes in vivo | from Experimental Protocols to Computational Analyses.- Chapter 10: Is Autogenous Post-Transcriptional Gene Regulation Common?.- Chapter 11: The Interplay of Non-Coding RNAs and X Chromosome Inactivation in Human Disease.- Chapter 12: Novel Insights of the Gene Translational Dynamic and Complex Revealed by Ribosome Profiling.- Chapter 13: Biophysical Analysis of MiRNA-Dependent Gene Regulation.- Chapter 14: Modeling and Analyzing the Flow of Molecular Machines in Gene Expression.- Chapter 15: Robust Approaches to Generating Reliable Predictive Models in Systems Biology.- Chapter 16: Hints from Information Theory for Analyzing Dynamic & High Dimensional Biological Data.- Chapter 17: Enhancing Metabolic Models with Genome-Scale Experimental Data.- Chapter 18: An Integrative MuSiCO Algorithm: from the Patient-Specific Transcriptional Profiles to Novel Checkpoints in Disease Pathobiology.- Chapter 19: Nanocellulose: a New Multifunctional Tool for RNA System Biology Research.
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